On Ubuntu/Debian, a header package is needed to compile RCurl: To update the git versions, repeat the install_github('IRkernel/') steps. to your account. Proof of support by CRAN (apparently I can only post 2 links as a new user) https://cran.r-project.org/web/packages/rgdal/index.html Error in loadNamespace: there is no package called 'jsonlite' #687 The key was to add C:\Users\[user name]\Anaconda3\Lib\site-packages\jupyter_client to my path variable. To learn more, see our tips on writing great answers. A video tutorial on how to add environment variables in Windows can be found here . Derek, Powered by Discourse, best viewed with JavaScript enabled, my repo where Im trying to run Tyler Morgan-Walls excellent rayshader package, Running sudo in Jupyter notebook launched from https://jupyter.org/try, Binder cannot install a requirement (GDAL). R : Error in loadNamespace (name) : there is no package called which causes lazy load to fail and then the entire install. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, I tried that and also removed the package IRkernel in R (with intention to reinstall it) and now I am unable to reinstall IRkernel. I think the new errors are telling me that a) the 'rattle' package isn't installed in the kernel and b) the "fancyRpartPlot" function is not available in the kernel, even though the 'rpart' seems to be installed. [W 19:39:58.245 LabApp] Kernel d9887cf8-91b0-4687-95e5-c7df132bac41 died, removing from map. Setting a user environment variable R_LIBS_USER to your user-specific library resolved the issue for me. When I run Jupyter with IRKernel on my macbook with Per default IRkernel::installspec() will install a kernel with the name ir and a I've tried removing the IRkernel and IRdisplay packages and re- installing the packages. So I think users with weird setups like you need to fix that themselves. We will soon submit the IRkernel package to CRAN. Asking for help, clarification, or responding to other answers. View solution in original post 1 Reply CoreyS Dataiker Alumni That is, for this error: Error in loadNamespace (name) : there is no package called 'PKG' You install the PKG package (use your package name intead of PKG ): install.packages("PKG") Why does that work? What is the symbol (which looks similar to an equals sign) called? All notebooks from your session will be saved in the current directory. Package source: IRkernel_1.3.2.tar.gz : Windows binaries: r-devel: IRkernel_1.3.2.zip, r-release: IRkernel_1.3.2.zip, r-oldrel . [W 19:41:35.082 LabApp] delete /Jupyter-Notebooks/Learning/R/Untitled1.ipynb, [I 19:41:40.256 LabApp] Kernel shutdown: 998c1283-5d7d-48cf-899a-6fb93e04f532, [W 19:41:40.267 LabApp] delete /Jupyter-Notebooks/Learning/R/Untitled.ipynb, [I 19:41:43.039 LabApp] Creating new notebook in /Jupyter-Notebooks/Learning/R, [I 19:41:43.344 LabApp] Kernel started: 3da0d49b-d215-4e18-ae25-c585d54e1bd7, [I 19:41:46.345 LabApp] KernelRestarter: restarting kernel (1/5), new random ports, [I 19:41:49.376 LabApp] KernelRestarter: restarting kernel (2/5), new random ports, [I 19:41:52.425 LabApp] KernelRestarter: restarting kernel (3/5), new random ports, [W 19:41:53.383 LabApp] Timeout waiting for kernel_info reply from 3da0d49b-d215-4e18-ae25-c585d54e1bd7, [I 19:41:55.446 LabApp] KernelRestarter: restarting kernel (4/5), new random ports, kernel 3da0d49b-d215-4e18-ae25-c585d54e1bd7 restarted, [W 19:41:58.471 LabApp] KernelRestarter: restart failed. Perhaps you might find the right spelling, in which case, install the package with the right spelling using install.packages. I have been installing IRkernel "by hand" for a while. R : Error in value [ [3L]] (cond) : there is no package called [I 19:39:39.744 LabApp] The Jupyter Notebook is running at: [I 19:39:39.744 LabApp] http://localhost:8889/?token=84033eeea5c929b4cb7324c9c9dbecd562efc7e733fc3b8e. Run IRkernel::installspec () from /usr/bin/R in as sudo and it should add the kernel. Installing R on Jupyter - Medium Let's list out some ways that you can address this issue. When I run my Jupyter + IRKernel notebook with Binder everything works well, except I receive the following error with several CRAN packages (rgdal, rgeos, ggspatial, sf): Error in library(rgdal): there is no package called rgdal Traceback: otherwise, Binder with IRKernel and Jupyter is working fine. reachable on localhost, start a container with: Open localhost:8888 in your browser. Not the answer you're looking for? If it's can't find the libraries then it must mean that it's not looking into the right directory for the libraries. To install in the sys.prefix of the currently What is this brick with a round back and a stud on the side used for? error display name of R. https://cran.r-project.org/web/packages/rgdal/index.html, Any assistance in getting these to work with Binder would be appreciated (Im new to github and binder) so the following repository may not be organized as it should. If you havent done this already, you will have to make Jupyter see the newly installed R kernel by installing a kernel spec. what I would try now: install conda's r-kernel conda install -c r r-irkernel zeromq, then start R from the command line and remove pdbZMQ. The kernel spec can be installed for the current user with the following line from R: To install system-wide, set user to False in the installspec command: If you use Jupyter lab (and you should! This answer is based on this by @Ryan, but since the question answered was actually about a Linux based system I put it here in a Windows question: One way to overcome the problem - if adding PATH variables to the environment doesn't work - is the following: You should try to open R in the terminal, if you changed directory where R il located type: I was having this issue trying to run Jupyter Lab on my Ubuntu 18.04 LTS headless server running in an Azure VM. Hi again:) Just to clarify: you mean by terminal the command prompt? MIP Model with relaxed integer constraints takes longer to solve than normal model, why? If it doesnt match you need to edit the kernel.json to contain the path from which R. Hi, I am having the same type of problem. If Anaconda is installed and the Jupyter-Notebook with it (should be the standard install), open up the Anaconda prompt, not the Windows command prompt or the Anaconda Navigator, Look up the executable of R (not Rgui or Rstudio), it should be somewhere like, Paste the path into the Anaconda prompt and start R by typing, Now you can start an R kernel within Jupyter-Notebook. To resolve the issued, I had to navigate to /usr/bin and open R from there. Thanks a lot, I finally figured a way outwas sort of mentioned in one of the posts I've linked. [W 19:39:39.378 LabApp] Terminals not available (error was No module named 'terminado'), [I 19:39:39.466 LabApp] JupyterLab beta preview extension loaded from C:\Anaconda\lib\site-packages\jupyterlab, [I 19:39:39.466 LabApp] JupyterLab application directory is C:\Anaconda\share\jupyter\lab, [I 19:39:39.744 LabApp] Serving notebooks from local directory: C:/Users/Alex Loftus/Dropbox/Programming/. Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, jupyter-client has to be installed but jupyter kernelspec --version exited with code 127. The IRKernel does not have any Python dependencies whatsoever, and No change so far. The text was updated successfully, but these errors were encountered: Error in loadNamespace(name) : there is no package called 'IRkernel'. R : Error in loadNamespace(name) : there is no package called 'evaluate'To Access My Live Chat Page, On Google, Search for "hows tech developer connect"As pr. Is a downhill scooter lighter than a downhill MTB with same performance? It only requires the jupyter command to be available on $PATH. Sign in You can install kernels for multiple versions of R Well R thinks here is an object, but it requires the R package to be in quotes. The IRKernel does not have any Python dependencies whatsoever, and does not know anything about any other Jupyter/Python installations you may have. Well, I never understood the weird shortened windows paths, so have you tried using the full path? 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. To install system-wide, by supplying a name and displayname argument to the installspec() call (You still need to You'll need zmq development headers to compile pbdZMQ (Click your OS): See this bugreport for instruction on how to compile on windows. You need to install an R package from github with a different command. Well, it could be one of the following below errors: It is quite likely that it is not to do with your version of R. I have, more often than I care to admit, had a spelling mistake that caused me to go on a rabbit hole. Until then, you can install it via the devtools package: Per default IRkernel::installspec() will install a kernel with the name ir and a 2. Install the package that is claimed not to be there. 3. The kernel spec can be installed for the current user with the following line from R: IRkernel::installspec () To install system-wide, set user to False in the installspec command: IRkernel::installspec (user = FALSE) 3/3) Make useful shortcuts available If you use Jupyter lab (and you should! 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. Error in loadNamespace(name) : there is no package called 'IRkernel On other platforms without docker, this can be started using docker-machine by replacing localhost with an IP from docker-machine ip
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